Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri

2012-06-01 Thread Bruce Fischl
Can you send us your command lines and screen output? On Jun 1, 2012, at 7:44 PM, Leon wrote: > Hi, folks > > when I transferred the annotation file obtained using > mri_make_face_parcellation based on ic2 (162 labels) to a volume file using > mri_label2vol, I found that one ROI patch was m

Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri

2012-06-01 Thread Leon
Fischl To: Leon Cc: FreeSurfer Sent: Friday, June 1, 2012 8:02 PM Subject: Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri Can you send us your command lines and screen output? On Jun 1, 2012, at 7:44 PM, Leon wrote: Hi, folks > > >when I transf

Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri

2012-06-01 Thread Douglas Greve
urfer *Sent:* Friday, June 1, 2012 8:02 PM *Subject:* Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri Can you send us your command lines and screen output? On Jun 1, 2012, at 7:44 PM, Leon <mailto:leonad...@yahoo.com>> wrote: Hi, folks when I transferred

Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri

2012-06-04 Thread Leon
: Douglas Greve To: freesurfer@nmr.mgh.harvard.edu Sent: Friday, June 1, 2012 11:29 PM Subject: Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri What version are you using? I fix a problem last Sept that might be like this. I've put a new version of mri_label2vol

Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri

2012-06-04 Thread Douglas N Greve
ces = 61916 >> Reading thickness >> /home/freesurfer/freesurfer/subjects/MacaqueB/surf/rh.thickness >> Loading annotations from >> /home/freesurfer/freesurfer/subjects/MacaqueB/label/rh.MacaqueA_to_MacaqueB.annot >> reading colortable from annotation file... >>

Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri

2012-06-04 Thread Leon
Greve To: Leon Cc: FreeSurfer Sent: Monday, June 4, 2012 1:00 PM Subject: Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri Can you upload the subject to our file drop system? www.nmr.mgh.harvard.edu/facility/filedrop/index.html On 06/04/2012 12:24 PM, Leon wrote

Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri

2012-06-04 Thread Douglas N Greve
y look almost identical. Do you have any ideas what else may cause > > this issue and possible workaround? > > > > Thank you > > > > Leon > > > > > > *From:* Douglas Greve <mailto:gr...@nmr.mgh.harvard.edu>> > > *To:* freesurfer@nmr.m

Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri

2012-06-07 Thread Douglas N Greve
*From:* Douglas N Greve > *To:* Leon > *Cc:* FreeSurfer > *Sent:* Monday, June 4, 2012 1:00 PM > *Subject:* Re: [Freesurfer] missing ROI when using mri_label2vol to > transfer ic2.tri > > Can you upload the subject to our file drop system? > > www.nmr.mgh.harvard.edu/facili

Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri

2012-06-07 Thread Leon
From: Douglas N Greve To: Leon Cc: FreeSurfer Sent: Thursday, June 7, 2012 2:03 PM Subject: Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri Hi Leon, I found the problem. mris_make_face_parcellation was actually merging several units together. You can get a fixed ve

Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri

2012-06-08 Thread Douglas N Greve
61. > > Thanks > > Leon > > PS: I am sending the message again because I was told that the image > for the previous mail is too big. > > *From:* Leon > *To:* Douglas N Greve > *Cc:* FreeSurfer > *Sent:* Thursday, June 7, 2012 10:52 PM > *Subject:* Re: [Fre

Re: [Freesurfer] missing ROI when using mri_label2vol to transfer ic2.tri

2012-09-05 Thread Douglas N Greve
-identity > > Many thanks in advance! > > Longchuan > > > > *From:* Douglas Greve > *To:* Longchuan Li > *Cc:* FreeSurfer > *Sent:* Monday, August 27, 2012 3:47 PM > *Subject:* Re: [Freesurfe