Re: [Freesurfer] mri_anatomical_stats with lobeStrict annot for multiple subjects

2018-04-17 Thread Douglas Greve
Run it for each subject using -f subject/stats/lh.lobesStrict.stats, then use aparcstats2table with -p lobesStrict to get a summary across all subjects On 4/16/18 7:18 AM, Fernanda Hansen P. de Moraes wrote: Douglas, I'm already extracting the data with mris_anatomical_stats -a SUBJ225/labe

Re: [Freesurfer] mri_anatomical_stats with lobeStrict annot for multiple subjects

2018-04-16 Thread Fernanda Hansen P. de Moraes
Douglas, I'm already extracting the data with mris_anatomical_stats -a SUBJ225/label/lh.lobesStrict.annot -b SUBJ225 lh But I would like to do it now for multiple subjects at once, as the data extraction. Righ now I'm just copying it to a table, one by one. Thank you! On Fri, Apr 13, 2018 at 8:1

Re: [Freesurfer] mri_anatomical_stats with lobeStrict annot for multiple subjects

2018-04-13 Thread Douglas Greve
If you look in the recon-all.log file, you will find the call to mris_anatomical stats used to generate the aparc.stats files. Just modify it select your annotation and output stats file name On 4/13/18 4:26 PM, Fernanda Hansen P. de Moraes wrote: Good night, I would like some help to extrac

[Freesurfer] mri_anatomical_stats with lobeStrict annot for multiple subjects

2018-04-13 Thread Fernanda Hansen P. de Moraes
Good night, I would like some help to extract mri_anatomical_stats with lobeStrict annot for multiple subjects in a table format, with the results for all subjects there. I've already tried aparcstats2table and I don't got how to insert the lobeStrict annot there. Thank you very much, Fernanda Mo