Re: [Freesurfer] mri_convert batch conversion of ima files

There's no easy way to do it. You can convert to a volume and then use the --slice-crop option in mri_convert to extract out individual slices. doug Lisa F. Akiyama wrote: Hello, I have a large number of slice files in ima format. I would like to convert each of these ima files into either

Re: [Freesurfer] mri_convert batch conversion of ima files

Hi Doug, Alright. I'll try doing that. Thanks for the information. Best, Lisa __ Lisa F. Akiyama Research Study Assistant Institute for Learning Brain Sciences (I-LABS) University of Washington Portage Bay Building, BOX 357988 Seattle, WA 98195-7988 U.S.A. E-mail:

[Freesurfer] mri_convert batch conversion of ima files

Hello, I have a large number of slice files in ima format. I would like to convert each of these ima files into either nifti or analyze format slice files. I read a past email conversation regarding batch conversion of ima files using mri_convert :

Re: [Freesurfer] mri_convert batch conversion of ima files

Oops...I made an mistake. Should had been: *ima - analyze *todd$ mri_convert -it ima -i 393-2-4.ima -ot analyze -o kh4.img mri_convert -it ima -i 393-2-4.ima -ot analyze -o kh4.img $Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $ reading from 393-2-4.ima... rows = 256 cols = 256