Hi Gayane, I don't know whether I answered this or not, but you will
need to add --surface fsaverage lh to your command line
doug
On 06/24/2013 12:18 PM, Gayane Aghakhanyan wrote:
Dear FreeSurfers
I'm using Freesurfer 5.1 on Ubuntu 12.04 LTS.
Currently running paired analysis as described
Dear FreeSurfers
I'm using Freesurfer 5.1 on Ubuntu 12.04 LTS.
Currently running paired analysis as described here
https://surfer.nmr.mgh.harvard.edu/fswiki/PairedAnalysis
After
mri_glmfit \
--glmdir lh.paired-diff \
--y lh.paired-diff.thickness.sm05.mgh \
--fsgd paired-diff.fsgd \
--C
