Re: [Freesurfer] mri_glmfit-sim - Clusterwise correction for multiple comparisons.

2023-10-15 Thread Douglas N. Greve
This is the kind of thing that happens with clusterwise corrections. It is hard to predict what happens. When you raise the threshold, you lose some of the activation in your real map (ie, clusters become smaller). But in the Null map, clusters also become smaller. So, at the lower threshold, t

Re: [Freesurfer] mri_glmfit-sim - Clusterwise correction for multiple comparisons.

2023-09-29 Thread John Anderson
External Email - Use Caution assuming that all preprocessing steps, fsgd file and contrasts are correct, the choice between doss and dods could explain some of the variability you're seeing in your results. Consider running both models and possibly additional validation to see whic

[Freesurfer] mri_glmfit-sim - Clusterwise correction for multiple comparisons.

2023-09-29 Thread Guthrie, Andrew J.
External Email - Use Caution Hi all, I took the freesurfer course in the recent past, and I am now beginning to run some glm thickness analyses! Currently I am doing a thickness analysis looking at the difference between two groups while controlling for age, and two continuous