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Hi,
I did, but if this is a new version it probably co-exists with the old
mri_surfcluster in my PATH (I am working on a server and am not
allowed to delete files there..hmm). Why do the two flags (--sig2pmax
and --bonferroni-max2) not appear in
Did you down load all the files in the patch? I think the new
mri_surfcluster is there
On 4/8/2020 8:51 AM, s7675...@stud.uni-frankfurt.de wrote:
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> Hi again,
> I already took a few more steps and set up PALM/ fspalm. It's working
> fine, up to the point where it do
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thanks a lot! I will run both over night - if the permutation issue
does not come up again, I agree that it would be the better option...
Best,
Doro
Zitat von "Douglas N. Greve" :
> On 4/6/2020 10:57 AM, s7675...@stud.uni-frankfurt.de wrote:
>> Exter
On 4/6/2020 10:57 AM, s7675...@stud.uni-frankfurt.de wrote:
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> Hi Douglas,
>
> thanks a lot for your quick response. I wanted to use Monte Carlo sim
> as all other analyses in our project include a monte carlo simulation
> and I try to keep things consistent. Am I
The problem is that mri_glmfit-sim is looking for a entry in the table
that does not exist. The table only goes up to a smoothness level of 35.
LGI data tend to bed very smooth. I would strongly recommend that you
use permutation instead. See
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial
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Dear Freesurfer experts,
I'm trying to run a simulation (--> mri_glmfit-sim) with cached LGI
data (fwhm10), but get an error due to the estimated fwhm kernel. The
folder corresponding to the fwhm value (-->37) does not exist, I guess
because it's
The 10mm is what you applied, but data will have an intrinsic
smoothness, and the final smoothness is a combo of the two. LGI data
tends to start out extremely smooth. I would re-run it without smoothing
and see what fwhm you get
doug
On 01/08/2013 03:24 PM, Gregory Kirk wrote:
>
>
>
> run
>
run
mri_glmfit-sim --glmdir lh.lgi.glmdir --cache 2 pos
get
cmdline mri_glmfit --y lh.lgi.10.mgh --fsgd lgi.fsgd dods --C CC.mtx --surf
subset_average lh --cortex --glmdir lh.lgi.glmdir
SURFACE: subset_average lh
log file is lh.lgi.glmdir/cache.mri_glmfit-sim.log
cd /study5/aa-scratch/UTAH/
