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Hi Douglas,
Thanks for the response. Yes, I confirm that the file
/home/cper2/BeneMin/Freesurfer/fsaverage/surf/lh.white exists and I can
view it in freeview. Any other possible errors?
Also, would you mind elaborating how to use permutation to
can you verify that /home/cper2/BeneMin/Freesurfer/fsaverage/surf/lh.white
exists and that you have read permission to it? Eg, can you load it with
freeview -f /home/cper2/BeneMin/Freesurfer/fsaverage/surf/lh.white
On 11/20/18 8:25 AM, C.P.E. Rollins wrote:
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Thanks Douglas, I've attached here the output from mri_glmfit-sim
--glmdir lh.5.lgi_MAN_new.glmdir --cache 1.3 pos --cwp 0.05 --2spaces
--debug
Could you clarify how to use permutation to correct for MC for LGI? (as
in what to enter for command
I can' tell what is going wrong there. Can you run it with --debug as
the first option and send the output? BTW, the MC correction for LGI is
probably not very accurate. I would recommend using permutation. See
here
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Dear Freesurfer Developers,
I'm trying to run mri_glmfit-sim to correct for multiple comparisons but
am receiving the following error:
cmdline mri_glmfit.bin --y lh.5.lgi_MAN_new.mgh --fsgd FSGD_MAN_new.txt
dods --glmdir lh.5.lgi_MAN_new.glmdir
