Did you name one of your contrasts
"lh-Avg-thickness-Gender*Age-Inter.mtx"? If so, then remove the star
("*") as that has special meaning to the shell
On 5/26/17 2:11 AM, Duy Nguyen wrote:
Dear Doug
After I add --debug like this: mri_glmfit-sim --debug --glmdir
lh.gender_age.glmdir --cache
Dear Doug
After I add --debug like this: mri_glmfit-sim --debug --glmdir
lh.gender_age.glmdir --cache 3 abs --cwp .999 --2spaces
The terminal output is shown in the attached file.
A bit overview about my analysis: I have 148 subjects that I am interested
in analyzing the gender and cortical thic
Can you add --debug as the first argument and send the terminal output?
On 05/19/2017 11:48 PM, Duy Nguyen wrote:
> Dear FreeSurfer experts,
>
> When I try to run mri_glmfit-sim, the output came out like this:
>
> cmdline mri_glmfit.bin --y lh.gender_age.thickness.10.mgh --fsgd
> lh.gender-age.f
Dear FreeSurfer experts,
When I try to run mri_glmfit-sim, the output came out like this:
cmdline mri_glmfit.bin --y lh.gender_age.thickness.10.mgh --fsgd
lh.gender-age.fsgd --C lh-Avg-thickness-FemaleMale.age.mtx --C
lh-Avg-thickness-FemaleMale.intercept.mtx --C
lh-Avg-thickness-Gender.diff.mtx
