Re: [Freesurfer] mri_glmfit-sim with grf (ERROR: need --csd with --csd-out)

Don't use --grf with surfaces On 6/15/2021 7:24 PM, Paul, Jhelum wrote: External Email - Use Caution Hello, I also have the same error. I have been looking into all the tutorials available for Freesurfer v7 and trying to search why, mri_glmfit-sim   --glmdir lh.age_gender_volume.gl

Re: [Freesurfer] mri_glmfit-sim with grf (ERROR: need --csd with --csd-out)

look at the tutorial On 6/1/2021 12:00 AM, Diógenes Bispo wrote: External Email - Use Caution I would like to know what other modification I should make to my script to run --grf (volume analysis): - mris_preproc ?? - mri_glmfit (--surf in white) - mri_glmfit-sim ?? Thanks. Diogen

Re: [Freesurfer] mri_glmfit-sim with grf (ERROR: need --csd with --csd-out)

External Email - Use Caution I would like to know what other modification I should make to my script to run --grf (volume analysis): - mris_preproc ?? - mri_glmfit (--surf in white) - mri_glmfit-sim ?? Thanks. Diogenes Bispo diogenesdi...@gmail.com Em sáb., 29 de mai. de 2021

Re: [Freesurfer] mri_glmfit-sim with grf (ERROR: need --csd with --csd-out)

You can't use the --grf option with surfaces On 5/29/2021 2:14 AM, Diógenes Bispo wrote: External Email - Use Caution Hi Freesurfer team. I made the following command: #!/bin/tcsh setenv study $argv[1] foreach hemi (lh rh)   foreach smoothing (10)     foreach meas (volume)         mr

[Freesurfer] mri_glmfit-sim with grf (ERROR: need --csd with --csd-out)

External Email - Use Caution Hi Freesurfer team. I made the following command: #!/bin/tcsh setenv study $argv[1] foreach hemi (lh rh) foreach smoothing (10) foreach meas (volume) mris_preproc --fsgd FSGD/{$study}.fsgd \ --cache-in {$meas}.fwhm{$smoothing}.