RE: [Freesurfer] mri_glmfit significiance verification outside freesurfer

2009-06-08 Thread Michael Harms
;> Date: Mon, 8 Jun 2009 19:21:53 -0400 >> From: gr...@nmr.mgh.harvard.edu >> To: ni...@nmr.mgh.harvard.edu >> CC: jsad...@hotmail.com; freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] mri_glmfit significiance verification >> outside freesurfer &

RE: [Freesurfer] mri_glmfit significiance verification outside freesurfer

2009-06-08 Thread Jeff Sadino
om: gr...@nmr.mgh.harvard.edu > To: ni...@nmr.mgh.harvard.edu > CC: jsad...@hotmail.com; freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] mri_glmfit significiance verification outside > freesurfer > > Also, p-values for t-tests are two-sided. > >

Re: [Freesurfer] mri_glmfit significiance verification outside freesurfer

2009-06-08 Thread Douglas N Greve
Also, p-values for t-tests are two-sided. Nick Schmansky wrote: Jeff, sig.mgh actually stores the -log10(p), not p, so to get the true p-value of say, -2 (in the sig.mgh), take 10^-2 (giving you the true p-value of 0.01). Nick On Mon, 2009-06-08 at 16:48 -0600, Jeff Sadino wrote: Hello

Re: [Freesurfer] mri_glmfit significiance verification outside freesurfer

2009-06-08 Thread Nick Schmansky
Jeff, sig.mgh actually stores the -log10(p), not p, so to get the true p-value of say, -2 (in the sig.mgh), take 10^-2 (giving you the true p-value of 0.01). Nick On Mon, 2009-06-08 at 16:48 -0600, Jeff Sadino wrote: > Hello Surfers, > > I am trying to verify the p-value sig.mgh maps outputte

[Freesurfer] mri_glmfit significiance verification outside freesurfer

2009-06-08 Thread Jeff Sadino
Hello Surfers, I am trying to verify the p-value sig.mgh maps outputted from the mri_glmfit command as the first part of a more advanced analysis. We have been extracting the thickness data for a single vertex from each of our 58 subjects in two control groups and then running a significiance