Re: [Freesurfer] mri_label2label volume registration problem

2016-07-25 Thread Douglas Greve
When you use --regmethod volume, it assumes that the label coordinates are in native anatomical space and then applies the mni305 registration (talairach.xfm). In this case, your source subject is fsaverage so the native space is assumed to be mni305 space (and talairach.xfm is the identity).

[Freesurfer] mri_label2label volume registration problem

2016-07-25 Thread Agoston Mihalik
Hi Freesurfer Developers, I would like to ask for your expertise in the following problem I encountered: I want to create subject specific labels based on a label I created in fsaverage. The transformation needs to be based on Talairach intermediate registration, since my label was drawn based