Dear all,
Given a series of fsaverage-registered rCBF maps, I am trying to extract
the average rCBF value from one specific region. This region, which was a
significant cluster from a volumetric (fsl) analysis, was binarized and
then converted to surface.
When I run mri_segstats with the --avgwf
Hi Marco,
The columns correspond to the integer IDs in the --seg image, so assuming
you passed in a binary mask the first column is mean over everything that
isn't your ROI and the second column is the mean in your ROI.
Cheers,
Michael
On Wed, Feb 29, 2012 at 10:56 AM, Marco Loggia wrote:
> Dea
Thank you so much Michael for clarifying this.
Final, related question: is there a way to retrieve the name/paths of the files
concatenated with mris_preproc to create the .mgh file mentioned below? I
usually have everything logged, but was wondering if there was something like a
flag for mri_
There should be a .log file created by mris_preproc. Is that good
enough? Also, when you run mri_sestats you can add "--id 1" and it will
only report the results for things inside your mask.
doug
Marco Loggia, PhD wrote:
> Thank you so much Michael for clarifying this.
>
> Final, related questi
Thanks Doug, that's even more than I need! :)
Good to know about the --id flag too...
Marco
On Mar 1, 2012, at 10:42 AM, Douglas N Greve wrote:
> There should be a .log file created by mris_preproc. Is that good enough?
> Also, when you run mri_sestats you can add "--id 1" and it will only repor
