Yolanda, don't run mris_anatomical_stats on fsaverage. You should map
the label to each individual with mri_label2label, then use
mris_anatomical_stats. Sorry for not being clearer eariler.
doug
Yolanda Vives wrote:
> Hi Bruce,
>
> That's the error:
>
> limiting computations to label
> fsaverag
Hi Bruce,
That's the error:
limiting computations to label
fsaverage/label/grouplabel_concro_rh-0001.label.
reading volume
/nfs/arpon/PROJCT/DEPR/proc/FREESURFER/WithModif/fsaverage/mri/wm.mgz...
ERROR: cannot find
/nfs/arpon/PROJCT/DEPR/proc/FREESURFER/WithModif/fsaverage/mri/wm.mgz
mris_anatomi
Hi Yolanda,
you need to email us the screen output with the error so we can diagnose
it.
cheers
Bruce
On Thu, 28 Jul 2011, Yolanda Vives wrote:
> Thank you Douglas for your suggestions!
>
> If I use mris_anatomical_stats, would I perform the following procedure?
>
> - To run "mri_label2label"
Thank you Douglas for your suggestions!
If I use mris_anatomical_stats, would I perform the following procedure?
- To run "mri_label2label" to all the subjects of my comparison
- To run mris_anatomical_stats. I would obtain the volume of the labels in
each subject
- Mean volume of all the subject
Hi Yolanda, don't use thmax (it will exclude everything with a sig>7 --
not what you want I assume). That command otherwise looks right, but it
won't correct for multiple comparisons. You can run
mris_anatomical_stats on the output label to give you the stats you want.
doug
Yolanda Vives wrot
Dear freesurfers,
I would like to obtain the cluster size (in mm3) and coordinates of the
maxima of a cortical volume comparison using mri_surfcluster.
mri_surfcluster --in
$PATH/control_cronic_dones_right_volume/rh-Diff-control-cronic-Intercept-volume/sig.mgh
--hemi rh --subject fsaverage --thmi
