You need something like this
mri_vol2vol --targ $SUBJECTS_DIR/fsaverage/mri/orig.mgz --mov
$FSLDIR/data/standard/MNI152_T1_2mm.nii.gz --o
fsaverage.orig.MNI152.nii.gz --inv --reg
$SUBJECTS_DIR/fsaverage/mri/transforms/reg.mni152.2mm.dat
On 04/03/2017 10:36 AM, Melanie Ganz wrote:
> Hi all,
>
>
Hi all,
my colleague Vincent wanted to register a volume in MNI305 to MNI152,
unfortunately the final image appears flipped up-down and
anterior-posterior when using the --mni152reg flag with mri_vol2vol. For
example, trying to resample fsaverage orig.mgz to MNI152 using
mri_vol2vol --mov $S
