Hi Greg, the target (--targ) should be a volume, not the name of a subject (eg, 816/mri/orig.mgz) doug On 02/21/2013 02:23 PM, Gregory Kirk wrote: > Greetings lords of freesurfer! > > I am having a problem getting a combined cvs warp+bbregister to map an FA > volume > onto a template. > > mri_vol2vol --targ 816 --m3z combined_to816_elreg_afteraseg-norm.m3z > --noDefM3zPath --reg > /study5/aa-scratch/TEENEMO/twins_tracula/recons/821/dmri/xfms/anatorig2diff.bbr.dat > --mov > /study5/aa-scratch/TEENEMO/twins_tracula/recons/821/dmri/dtifit_FA.nii.gz --o > test --no-save-reg > > spits out > Using the m3z file as it is; no assumed location. > movvol > /study5/aa-scratch/TEENEMO/twins_tracula/recons/821/dmri/dtifit_FA.nii.gz > targvol 816 > outvol test > regfile > /study5/aa-scratch/TEENEMO/twins_tracula/recons/821/dmri/xfms/anatorig2diff.bbr.dat > invert 0 > tal 0 > talres 2 > regheader 0 > noresample 0 > interp trilinear (1) > precision float (3) > Gdiag_no -1 > Morphing > InvertMorph 0 > Synth 0 > SynthSeed 1362252270 > corRead(): can't open file > /study5/aa-scratch/TEENEMO/twins_freesurfer/816/COR-.info > > i know i have not seen a file COR-.info in the top level > subject directory in the modern age of the universe. > > i know i saw this before but my notes from the last time > i figured this out got lost in a file system cleanup. > > can one of you tell me where i went astray ? > > thank you > > Greg > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
