Re: [Freesurfer] mri_vol2vol with --inv-morph producing unexpected results

2020-09-09 Thread Douglas N. Greve
Can you try using mri_convert? Like, mri_convert mni152.nii.gz --apply_inverse_transform xform.m3z subject.mgz Let me know if that works On 9/8/2020 8:28 PM, Noriana Jakopin wrote: External Email - Use Caution Hello, I just wanted to follow up on this and see if anyone had any suggest

Re: [Freesurfer] mri_vol2vol with --inv-morph producing unexpected results

2020-09-08 Thread Noriana Jakopin
External Email - Use Caution Hello, I just wanted to follow up on this and see if anyone had any suggestions, as I still have not resolved the issue. Best, Noriana Jakopin On Tue, Aug 18, 2020 at 12:54 PM Noriana Jakopin wrote: > Hello FreeSurfer Developers, > I am attempting t

[Freesurfer] mri_vol2vol with --inv-morph producing unexpected results

2020-08-18 Thread Noriana Jakopin
External Email - Use Caution Hello FreeSurfer Developers, I am attempting to use the inverse of the final m3z registration file produced by mri_cvs_register to take files in mni152 space back into my subject's space. I used mri_vol2vol with the --inv-morph flag to accomplish this.