- This is a repost. It seems it did not come trough yesterday.
Apologies if this becomes a double post -
Hi all,
I noticed that during skull stripping the standard recon-all pipeline
uses option -brain_atlas in the routine mri_watershed. However
documentation of this argument cannot be found
Hi Tom
I'll cc Flo who wrote this code (a long time ago!). I think the
-brain_atlas flag takes a gca atlas and uses it to avoid large-scale
errors, while -atlas uses some built-in statistics about the shape and size
of e.g. the cerebellum to avoid erasing it accidentally. Flo can correct me
Hi all,
I noticed that during skull stripping the standard recon-all pipeline
uses option -brain_atlas in the routine mri_watershed. However
documentation of this argument cannot be found in the help section or
on the website.
mri_watershed --help | less -p atlas
