Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface

2021-05-27 Thread Douglas N. Greve
s...@mgh.harvard.edu> *Sent:* Monday, April 26, 2021 5:05 PM *To:* freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> <mailto:freesurfer@nmr.mgh.harvard.edu> *Subject:* Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface Oh, then you

Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface

2021-05-24 Thread Jensen, Alexandria
urfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface You can use mri_segstats on the output to get your table of values for each ROI. Run it with --help and see example 5 On 4/27/2021 1:50 PM, Jensen, Alexandria wrote: External Email - Use Cauti

Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface

2021-05-10 Thread Douglas N. Greve
t; on behalf of Fischl, Bruce mailto:bfis...@mgh.harvard.edu>> *Sent:* Monday, April 26, 2021 2:45 PM *To:* freesurfer@nmr.mgh.harvard.edu <mailto:freesurfer@nmr.mgh.harvard.edu> mailto:freesurfer@nmr.mgh.harvard.edu>> *Subject:* Re: [Freesurfer] mris_anatomical_stats() for O

Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface

2021-04-27 Thread Jensen, Alexandria
@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface Oh, then you don’t need -l at all I don’t think. Have you sampled your ODI file onto the surface? From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Jensen, Alexandria Sent: Monday, April 26

Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface

2021-04-26 Thread Fischl, Bruce
>> Sent: Monday, April 26, 2021 2:45 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface Hi Alexandria The file given in the

Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface

2021-04-26 Thread Jensen, Alexandria
atlas. Alexandria From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Fischl, Bruce Sent: Monday, April 26, 2021 2:45 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface Hi Alexandria

Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface

2021-04-26 Thread Fischl, Bruce
April 25, 2021 8:35 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface what is your mris_anatomical_stats command and terminal o

Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface

2021-04-26 Thread Jensen, Alexandria
/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) on behalf of Douglas N. Greve Sent: Sunday, April 25, 2021 8:35 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface what is your mris_anatomical_stats command

Re: [Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface

2021-04-25 Thread Douglas N. Greve
what is your mris_anatomical_stats command and terminal output? On 4/22/2021 4:48 PM, Jensen, Alexandria wrote: External Email - Use Caution Hello fellow Freesurfer users, I am attempting to reproduce the analysis conducted by Parker et al. in their 2018 paper, “Cortical microstr

[Freesurfer] mris_anatomical_stats() for ODI maps inflated to surface

2021-04-22 Thread Jensen, Alexandria
External Email - Use Caution Hello fellow Freesurfer users, I am attempting to reproduce the analysis conducted by Parker et al. in their 2018 paper, “Cortical microstructure in young onset Alzheimer's disease using neurite orientation dispersion and density imaging” (https://s