Re: [Freesurfer] mris_preproc skips subjects

2015-03-02 Thread Douglas N Greve
Can you send your fsgd file? On 02/21/2015 08:42 AM, Anders Hougaard wrote: > Dear Freesurfers, > > Sorry for this newbie question: > I'm preparing my data for a group analysis using mris_preproc: > > mris_preproc --fsgd nocov.fsgd --target fsaverage --hemi lh --meas > thickness --out lh.nocov.thi

Re: [Freesurfer] mris_preproc skips subjects

2015-02-24 Thread Anders Hougaard
Hi again, I'm still totally stuck here. Any idea what the problem might be? I tried running mris_preproc with the --s option instead of --fsgd and this apparently works for all subjects that I tried so far. Now, using --fsgd, mris_preproc only processes the first subject in group 2?! All the

[Freesurfer] mris_preproc skips subjects

2015-02-21 Thread Anders Hougaard
Dear Freesurfers, Sorry for this newbie question: I'm preparing my data for a group analysis using mris_preproc: mris_preproc --fsgd nocov.fsgd --target fsaverage --hemi lh --meas thickness --out lh.nocov.thickness.00.mgh I have 120 subjects in total and my FSGD file simply looks like this Grou