Not sure about mris_transform, but you can use
mris_applyreg --lta source-surf ltafile output-surf
You will have to convert your flirt reg to lta (lta_convert --infsl
flirt.mtx --outlta flirt.lta --src flirtinput.nii --trg flirtoutput.nii)
On 10/13/2022 9:40 PM, Chris Adamson wrote:
E
External Email - Use Caution
Freesurfer experts,
I'm trying to put some subject surfaces into a template space. I have performed
the following flirt registration per subject:
flirt -in $SUBJECTS_DIR/$CURSUBJECT/mri/T2.nii.gz -ref template0.nii.gz -omat
$SUBJECTS_DIR/$CURSUBJECT
