Re: [Freesurfer] mritotal failed - help with manual registration (Bruce Fischl)

2016-02-04 Thread Bruce Fischl
Fischl     Subject: Re: [Freesurfer] mritotal failed - help with manual             registration    (Bruce Fischl)     To: Freesurfer support list     Message-ID:     Content-Type: text/plain; charset="us-ascii"     Hi Will     There was no attachment     Bruce     > On Feb 2, 201

Re: [Freesurfer] mritotal failed - help with manual registration (Bruce Fischl)

2016-02-02 Thread Bruce Fischl
Hi Will There was no attachment Bruce > On Feb 2, 2016, at 3:27 AM, will brown wrote: > > Hi Bruce, > > I've attached a shot of the misalignment as seen in freeview. > > Yes the original images were DICOM created in Siemens machine T1, 0.8 slice > thickness, can provide all DICOM tags if nee

Re: [Freesurfer] mritotal failed - help with manual registration (Bruce Fischl)

2016-02-02 Thread will brown
Hi Bruce, I've attached a shot of the misalignment as seen in freeview. Yes the original images were DICOM created in Siemens machine T1, 0.8 slice thickness, can provide all DICOM tags if needed. Thanks, Will On Tue, Jan 26, 2016 at 6:00 AM, wrote: Send Freesurfer mailing list submissions t

Re: [Freesurfer] mritotal failed - help with manual registration (Bruce Fischl)

2016-01-28 Thread Bruce Fischl
Hi Will it looks like there is incomplete myelination, which is probably part of your problem. You could try manually adjusting the transform in tkregister2 cheers Bruce On Thu, 28 Jan 2016, will brown wrote: Hi Bruce, I've attached a shot of the misalignment as seen in freeview. Yes the or