mr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] *On Behalf Of *Douglas
> Greve
> *Sent:* vrijdag 18 december 2015 18:28
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* Re: [Freesurfer] no aseg.stats after recon-all -all?
>
> Does //usr/local/freesurfer5/average/lh.DKTa
Does //usr/local/freesurfer5/average/lh.DKTatlas40.gcs exist?
/
On 12/17/15 5:53 PM, Schweren, LJS (med) wrote:
Dear Freesurfer experts,
I'm trying to get BrainSeg for 5 subjects. I'm running the following
commands:
/for scan in ...
do
cd $SUBJECTS_DIR
recon-all -all -subjid $scan
done/
No, it doesn't exist (lh nor rh)
Can I get it somewhere?
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas Greve
Sent: vrijdag 18 december 2015 18:28
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] no aseg.stats after
Dear Freesurfer experts,
I'm trying to get BrainSeg for 5 subjects. I'm running the following commands:
for scan in ...
do
cd $SUBJECTS_DIR
recon-all -all -subjid $scan
done
It completes recon-all, but with errors. These are the errors:
[me@mycomp]$ cat recon-all.error
