Re: [Freesurfer] orientation in freeview

2017-02-10 Thread Antonin Skoch
Dear Zhewei, I think that the problem you report is caused by the fact, that .mat file from FLIRT codes vox2vox transformation, so that cannot be applied to another dataset (in your case fMRI) unless it has the same geometry as the original image the .mat file was generated on. Antonin Can

Re: [Freesurfer] orientation in freeview

2017-02-10 Thread Douglas Greve
Can you send your freeview command line and pictures of the mismatch? On 2/9/17 5:58 PM, Zhewei Wang wrote: Hi all, I have a problem maybe relevant to the orientation of images in freeview. I have two images, one is fMRI and one is MRI. They are produced from the same machine at the same ti

[Freesurfer] orientation in freeview

2017-02-09 Thread Zhewei Wang
Hi all, I have a problem maybe relevant to the orientation of images in freeview. I have two images, one is fMRI and one is MRI. They are produced from the same machine at the same time. I loaded both of them in freeview and it showed they are matched very well, even they have different resolution