Re: [Freesurfer] overlapping area question

2016-09-11 Thread Arkadiy Maksimovskiy
Hi Doug, Thank you for the information about the matlab method. Since asking the question, I found a way to do this with the help of tksurfer and freesurfer commands, and wanted to share with the community, in case someone will find this useful in the future. Basically, after the desired

Re: [Freesurfer] overlapping area question

2016-08-25 Thread Douglas N Greve
THere is not an easy way to do this from the command line. You can do it from matlab, something like [Yvertices Ylabel Ycolortable] = read_annotation('lh.Yeo2011_7Networks_N1000.annot') [Cvertices Clabel Ccolortable] = read_annotation('cache.th13.abs.sig.ocn.annot'); Then find the vertices

[Freesurfer] overlapping area question

2016-08-24 Thread Arkadiy Maksimovskiy
Hello Freesurfers, I was wondering if someone might have information for how I can measure overlapping areas between a cluster that was generated as a results of a cortical thickness analysis, with a portion of a Yeo Network atlas. Specifically, I would like to calculate the percentage that the