Re: [Freesurfer] parcellated hemisphere into matlab

2017-06-01 Thread Bruce Fischl
-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: 27 May 2017 16:00 To: Freesurfer support list Subject: Re: [Freesurfer] parcellated hemisphere into matlab Hi Fatima have you run the data through recon-all? Bruce n Thu, 25 May 2017

Re: [Freesurfer] parcellated hemisphere into matlab

2017-06-01 Thread Almarshad F.
support list Subject: Re: [Freesurfer] parcellated hemisphere into matlab Hi Fatima have you run the data through recon-all? Bruce n Thu, 25 May 2017, Almarshad F. wrote: > > Dear Freesurfer expert; > >   > > I’m new to Freesurfer and confused about the workflow .. > &g

Re: [Freesurfer] parcellated hemisphere into matlab

2017-05-27 Thread Bruce Fischl
Hi Fatima have you run the data through recon-all? Bruce n Thu, 25 May 2017, Almarshad F. wrote: Dear Freesurfer expert;   I’m new to Freesurfer and confused about the workflow ..   I am trying to create cortical surface mesh consisted of percolated areas, and have done manual percolatio

Re: [Freesurfer] parcellated hemisphere into matlab

2017-05-25 Thread Douglas N Greve
try $FREESURFER_HOME/matlab/read_annotation. On 05/25/2017 03:21 PM, Almarshad F. wrote: > > Dear Freesurfer expert; > > I’m new to Freesurfer and confused about the workflow .. > > I am trying to create cortical surface mesh consisted of percolated > areas, and have done manual percolation by c

[Freesurfer] parcellated hemisphere into matlab

2017-05-25 Thread Almarshad F.
Dear Freesurfer expert; I'm new to Freesurfer and confused about the workflow .. I am trying to create cortical surface mesh consisted of percolated areas, and have done manual percolation by creating my own labels and .annot file I don't know what is the next step to get the parcellated hemisph