[Freesurfer] pathstats.byvoxel.txt

2013-07-15 Thread Susan Kuo
Hi Anastasia, I noticed that my pathstats.byvoxel.txt files are missing the last four values (AD_Avg RD_Avg MD_Avg FA_Avg) even though I'm certain I ran trac-all -path -c correctly. Do you have any idea why this might be? e.g. a configuration file change? Thank you! -- Susie Kuo Mediocrity

[Freesurfer] pathstats.byvoxel.txt

2013-07-15 Thread Susan Kuo
Hi Anastasia, I believe the issue I had with the pathstats.byvoxel.txt not displaying the last four values (AD_Avg RD_Avg MD_Avg FA_Avg ) is owing to the fact that trac-all was run with FREESURFER 5.1. I believe that FREESURFER 5.2 may be needed to generate path.pd.trk, and from that, the above v

Re: [Freesurfer] pathstats.byvoxel.txt

2013-07-15 Thread Anastasia Yendiki
That is exactly right! Those were added after 5.1. On Mon, 15 Jul 2013, Susan Kuo wrote: Hi Anastasia,   I believe the issue I had with the pathstats.byvoxel.txt not displaying the last four values (AD_Avg RD_Avg MD_Avg FA_Avg ) is owing to the fact that trac-all was run with FREESURFER 5.1.

Re: [Freesurfer] pathstats.byvoxel.txt

2013-07-15 Thread Anastasia Yendiki
I should add that there several other reasons to be using the newer version of tracula (from 5.2 or 5.3), including speed and other improvements listed here: http://surfer.nmr.mgh.harvard.edu/fswiki/Tracula#Updates Also note that using 5.2 or 5.3 won't make a difference in terms of th