Just subcortical. BTW, going to 1mm will probably create very large files.
doug
On 11/28/2012 03:52 AM, Jörg Pfannmöller wrote:
> A last question to this topic. Does the resolution of the MNI305 brain
> affected the surface based analysis or is it exclusively affecting the
> subcortical analysis
A last question to this topic. Does the resolution of the MNI305 brain affected
the surface based analysis or is it exclusively affecting the subcortical
analysis?
On Tue, 27 Nov 2012 13:30:04 -0500
Douglas N Greve wrote:
> Note that each of those set commands should be a single line. The file
Note that each of those set commands should be a single line. The file
to change is $FREESURFER_HOME/fsfast/bin/rawfunc2tal-sess
doug
On 11/27/2012 01:23 PM, Douglas N Greve wrote:
> Yep, that's a bug. I've fixed it in my version. To fix it in yours, do
> the following two steps:
>
> Step 1:
>
Yep, that's a bug. I've fixed it in my version. To fix it in yours, do
the following two steps:
Step 1:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/subcort.mask.1mm.mgz
cp subcort.mask.1mm.mgz $SUBJECTS_DIR/fsaverage/mri
Step 2: In rawfunc2tal-sess, change:
set subcortma
Hi,
if I apply the following command:
preproc-sess -s sessID -fsd bold -nostc -surface fsaverage lhrh -mni305-1mm
-fwhm 0 -per-run -nosmooth -force
The preprocessing runs into trouble at the following point
mri_vol2vol done
mri_mask /...path.../bold/001/masks/brain.mni305.1mm.nii
/usr/local/
