Hello freesurfers,
I am trying to unpack a couple of recent subjects in Stable 4. I ran all
steps through recon-all without error. However, when I try to run the next
step, preproc-sess, it keeps failing.
This is the command I enter:
preproc-sess -s FB0011060AA -fwhm 5
It works for about 30 sec
Hi Doug,
My original email was sent to the freesurfer list.
Here is the more detailed terminal info:
FREESURFER_HOME: /usr/local/freesurfer/stable4
Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.5.0-20100311
RedHat release: CentOS release 5.5 (Final)
Kernel info: Linux 2.6.18-194.8.1.
Hi Adam, the problem is that the original fmc.nii was generated with an
error because of the lack of disc space. But the file itself exists and
has a creation date after f.nii, so preproc-sess did not know that there
was anything wrong with it and did not try to regenerate it. Try
deleting fmc.
Hi Doug,
That did the trick! Thanks so much!
-Adam
> Hi Adam, the problem is that the original fmc.nii was generated with an
> error because of the lack of disc space. But the file itself exists and
> has a creation date after f.nii, so preproc-sess did not know that there
> was anything wrong w
Hi,
I am trying to analyze my fMRI data ( collected at MGH) using FSFAST and
I was following the tutrial
(http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastWorkFlows).
I was able to unpack the data. But when I run "preproc-sess -s
-fwhm 2", it fails at 3dvolreg. Here is the log file
fmc.nii.mcl
does that file exist? Did that disk run out of space?
Krishna Srihasam wrote:
Hi,
I am trying to analyze my fMRI data ( collected at MGH) using FSFAST
and I was following the tutrial
(http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastWorkFlows).
I was able to unpack the data. But when I run "pre
