[Freesurfer] problem with autorecon2-cp

2022-09-02 Thread Mostafa Fakhri
External Email - Use Caution Hi there, I need just wm.seg.hgz image therefore I used autorecon2-cp: recon-all -sd /share/users/mfakhri/freeSurfer-analys/subjects -subject 102109_3T -i /share/users/mfakhri/freeSurfer-analys/102109_3T/T1w.nii.gz -autorecon2-cp but it doesn't work w

Re: [Freesurfer] problem with autorecon2-cp

2022-09-02 Thread Douglas N. Greve
Use both -autorecon1 and autorecon2-cp On 9/2/2022 8:27 AM, Mostafa Fakhri wrote: External Email - Use Caution Hi there, I need just wm.seg.hgz image therefore I used autorecon2-cp: recon-all -sd /share/users/mfakhri/freeSurfer-analys/subjects -subject 102109_3T -i /share/users/mfak

Re: [Freesurfer] problem with autorecon2-cp

2022-09-03 Thread Mostafa Fakhri
External Email - Use Caution Hi Doug, Thank You for your response I have a new problem I used -autorecon1 and autorecon2-cp: recon-all -sd /share/users/mfakhri/freeSurfer-analys/subjects -subject fastWM -i /share/users/mfakhri/freeSurfer-analys/100610_7T/T1w.nii.gz -autorecon1 -au

Re: [Freesurfer] problem with autorecon2-cp

2022-09-03 Thread Fischl, Bruce
: Saturday, September 3, 2022 6:23 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] problem with autorecon2-cp External Email - Use Caution Hi Doug, Thank You for your response I have a new problem I used -autorecon1 and autorecon2-cp: recon-all -sd /share/users/mfakhri

Re: [Freesurfer] problem with autorecon2-cp

2022-09-06 Thread Mostafa Fakhri
External Email - Use Caution Hi Bruce, It works.Thank you so much. Actually I need just rawavrg.mgz and wm.seg.mgz, I think using autorecon2 is quick way to to produce these images. Is this correct? Mostafa ___ Freesurfer mailing list F

Re: [Freesurfer] problem with autorecon2-cp

2022-09-07 Thread Fischl, Bruce
@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] problem with autorecon2-cp External Email - Use Caution Hi Bruce, It works.Thank you so much. Actually I need just rawavrg.mgz and wm.seg.mgz, I think using autorecon2 is quick way to to produce these images. Is this correct? Mostafa

Re: [Freesurfer] problem with autorecon2-cp

2022-09-10 Thread Mostafa Fakhri
External Email - Use Caution Thank you for sharing your expertise. Mostafa ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended