On 2/11/2020 9:26 AM, Benjamin Ineichen wrote:
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Dear Freesurfer experts,
I ran recon-all on 100 subjects. Around 20 of them needed manual
corrections of the pial surface on the brainmask.mgz.
1.) Can I run the command: "recon-all -make all- s " on all
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Dear Freesurfer experts,
I ran recon-all on 100 subjects. Around 20 of them needed manual
corrections of the pial surface on the brainmask.mgz.
1.) Can I run the command: "recon-all -make all- s " on all 100
subjects and it will only recon-all the
Hi Vasudev
you don't need the whole path for the -s switch, just the subject ID (in
this case it looks like HC13)
cheers
Bruce
On Mon, 8 Oct 2018, Dev vasu wrote:
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Dear all,
I am encountering following error whenever i re-rerun my recon-all on
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Dear all,
I am encountering following error whenever i re-rerun my recon-all on
cluster,,although i have downloaded new development version of
recon-all.makefile, this error persists,kindly let me know what i am doing
wrong
recon-all -make all -s
Hello,
I am reprocessing a number of subjects from fs 4.5.0 to fs 5.0.0. I am
doing this by issuing the recon-all -make all -s subject command. It
stops right away with the message:
make: Nothing to be done for `all'.
There exists the wmparc.stats file from the fs450 recon, but there is
no
Hi freesurfers,
I just got this error while continuing processing of a subject:
mri_average:
MRIread(/PROJECTS/TOBIASS/SPM_software/freesurfer/subjects/VBM_SLE/NPSLE/bittner/mri/tmp-mri_motion_correct.fsl-25287/cor-2.img)
failed
Linux titan 2.6.18-128.el5 #1 SMP Wed Dec 17 11:41:38 EST 2008
is that disk full?
doug
aekai...@umich.edu wrote:
Hi freesurfers,
I just got this error while continuing processing of a subject:
mri_average:
MRIread(/PROJECTS/TOBIASS/SPM_software/freesurfer/subjects/VBM_SLE/NPSLE/bittner/mri/tmp-mri_motion_correct.fsl-25287/cor-2.img)
failed
Linux
Are the inputs (001.mgz and 002.mgz) the same size? They have slightly
different acquisition parameters, which is not a good sign ...
aekai...@umich.edu wrote:
Hi again,
The disk is not full and attached is the recon-all.log
best,
Anson K.
University of Michigan
On Mon, 19 Jul 2010