Re: [Freesurfer] recon-all -make all error

2018-10-07 Thread Bruce Fischl
Hi Vasudev you don't need the whole path for the -s switch, just the subject ID (in this case it looks like HC13) cheers Bruce On Mon, 8 Oct 2018, Dev vasu wrote: External Email - Use Caution Dear all, I am encountering following error whenever i re-rerun my recon-all on

[Freesurfer] recon-all -make all error

2018-10-07 Thread Dev vasu
External Email - Use Caution Dear all, I am encountering following error whenever i re-rerun my recon-all on cluster,,although i have downloaded new development version of recon-all.makefile, this error persists,kindly let me know what i am doing wrong recon-all -make all -s

[Freesurfer] recon-all -make all error?

2010-12-06 Thread Jeff Sadino
Hello, I am reprocessing a number of subjects from fs 4.5.0 to fs 5.0.0. I am doing this by issuing the recon-all -make all -s subject command. It stops right away with the message: make: Nothing to be done for `all'. There exists the wmparc.stats file from the fs450 recon, but there is no