Re: [Freesurfer] recon-all clinical : usage with contrast-enhanced T1-weighted images?

2024-06-14 Thread Iglesias Gonzalez, Juan E.
Eugenio Iglesias http://www.jeiglesias.com From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Barbara Bellenberg Date: Thursday, June 13, 2024 at 3:30 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] recon-all clinical : usage with contrast-enhanced T1-weighted images

Re: [Freesurfer] recon-all clinical : usage with contrast-enhanced T1-weighted images?

2024-06-13 Thread Gopinath, Karthik
Hi Barbara, Yes, you can use recon-all-clinical for the enhanced T1. But, the surface reconstruction might fail and in that case, you might have to try running SynthSR + recon-all. Thank you, Karthik On Jun 13, 2024, at 1:30 AM, Barbara Bellenberg wrote: External Email - Use Caution

[Freesurfer] recon-all clinical : usage with contrast-enhanced T1-weighted images?

2024-06-13 Thread Barbara Bellenberg
External Email - Use Caution Dear all, I would like to use the recon-all-clinical pipeline with Gadolinium contrast-enhanced 3D-T1 weighted images. Can you tell me if recon-all-clinical is suitable for this purpose? Thanks in adcance for your support! Barbara