I'm not sure what is happening or why the tal reg is apparently failing.
My guess is that it is something non-standard about the image. The first
thing to try is to run it at 1mm (without the -hires). At some point,
you may have to send us the volume (or at least some pictures in axial,
sag, and cor)
On 1/24/2022 2:58 AM, Hickling, Alice wrote:
External Email - Use Caution
Hi FreeSurfer Developers,
I’m trying to run recon-all on a high resolution (0.65mm iso) MP2RAGE
however I am receiving the following error.
talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm
talairach_avi log file is transforms/talairach_avi.log...
ERROR: mpr2mni305 failed, see transforms/talairach_avi.log
These are the options that I am using.
recon-all -all -s Freesurfer -i denoised_MP2RAGE.nii -T2
mean_denoised_MP2RAGE_T2W.nii -T2pial -multistrip -hires
Please let me know if you can help.
* FreeSurfer version: 7.2.0
(freesurfer-linux-centos7_x86_64-7.2.0-20210720-aa8f76b)
* Platform: CentOS Linux release 7.9.2009 (Core), Rocks release 7.0
(Manzanita)
* Uname -a: Linux compute-0-14.local 3.10.0-957.27.2.el7.x86_64 #1
SMP Mon Jul 29 17:46:05 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
* Recon-all.log: see attached
* Talairach_avi.log: see attached
Best wishes,
Alice
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