[Freesurfer] recon-all failing to generate wm surface

2022-11-23 Thread Christopher Mcnorgan
External Email - Use Caution A student and I have independently been trying to reconstruct a dataset. We've tried it a couple different ways using either an additional FLAIR or a T2 image and always hit a point where the process halts because of a missing surface file: Loading

Re: [Freesurfer] recon-all failing to generate wm surface

2022-11-28 Thread Huang, Yujing
process and flags: https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all Best, Yujing From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Christopher Mcnorgan Sent: Wednesday, November 23, 2022 5:10 PM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] recon-all failing to generate wm s

Re: [Freesurfer] recon-all failing to generate wm surface

2022-11-28 Thread Douglas N. Greve
please send the recon-all.log file On 11/23/2022 5:10 PM, Christopher Mcnorgan wrote: External Email - Use Caution A student and I have independently been trying to reconstruct a dataset. We've tried it a couple different ways using either an additional FLAIR or a T2 image and always

Re: [Freesurfer] recon-all failing to generate wm surface

2022-11-28 Thread Huang, Yujing
ember 23, 2022 5:10 PM To: freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu> Subject: [Freesurfer] recon-all failing to generate wm surface External Email - Use Caution A student and I have independently been trying to reconstruct a dataset. We've tried it a