Re: [Freesurfer] recon-all fatal error

2018-07-11 Thread Dicamillo, Robert
Hello Daniel, The docker container may not be properly supporting symbolic links, i.e., apparently you can write files inside the container, but in your log that error is the first instance of the ln command. Could you try running it w/o using a container and see if it gets past the ln comman

Re: [Freesurfer] recon-all fatal error

2018-07-11 Thread Dicamillo, Robert
Hello Daniel, The docker container may not be properly supporting symbolic links, i.e., apparently you can write files inside the container, but in your log that error is the first instance of the ln command. Could you try running it w/o using a container and see if it gets past the ln comman