Re: [Freesurfer] recon-all process still not finishing properly

, Yilei *From:* Dong, Yilei *Sent:* Tuesday, April 23, 2024 3:34 PM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] recon-all process still not finishing properly Hi Freesurfer support, I have several

Re: [Freesurfer] recon-all process still not finishing properly

or it's more of a cluster issue I have to talk with the staff that manage it? Sincerely, Yilei From: Dong, Yilei Sent: Tuesday, April 23, 2024 3:34 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all process still not finishing properly Hi

Re: [Freesurfer] recon-all process still not finishing properly

on behalf of Douglas N. Greve Sent: Thursday, April 18, 2024 2:57 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] recon-all process still not finishing properly not sure what is happening. You can run recon-all with -debug and capture the output (both stdout and stderr

Re: [Freesurfer] recon-all process still not finishing properly

not sure what is happening. You can run recon-all with -debug and capture the output (both stdout and stderr) into a file. This will cause it to print out huge amounts of text specifying what it is doing on each line. You should also see if there is some stderr output that is not being caught.