Hi Jonathan,
if you load the filled.mgz you should be able to see whether the cerebellum is
still attached, if so you might want to either edit the wm.mgz, the brainmask,
or make sure pons and cc were properly detected. For my non-human subjects I
have to always check the filled.mgz before runn
Hi Jonathan
usually that means there is a giant defect that will not be corrected
properly (e.g. cerebellum or skull attached). Did you check the
?h.inflated.nofix or ?h.orig.nofix surfaces?
cheers
Bruce
On Tue, 19 Jul 2011, Jonathan
McDaniel wrote:
Hi,
I have been running a surface re
Hi,
I have been running a surface reconstruction for over 19 days now, and it is
still in the process of correcting defects. Based on how long it took to do
one hemisphere (it is now on the second) it appears it will be done
hopefully within 3 days. I have been concurrently running other subject
