[Freesurfer] recon-all terminates with error

2023-01-05 Thread MANSON ERIC NAAB
External Email - Use Caution Dear FreeSurfer experts, I am a first time FreeSurfer user trying to run a recon-all for a sT1_W image. However, recon-all terminates with an error "tag image orientation not found" I need help on how to resolve this. Kindly find the recon-all.log fil

Re: [Freesurfer] recon-all terminates with error

2023-01-06 Thread Huang, Yujing
It looks like there is a problem with your input dicom file - image orientation tag is missing. From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of MANSON ERIC NAAB Sent: Thursday, January 5, 2023 11:15 PM To: Freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] recon-all terminates

Re: [Freesurfer] recon-all terminates with error

2023-01-06 Thread MANSON ERIC NAAB
t; *To:* Freesurfer@nmr.mgh.harvard.edu > *Subject:* [Freesurfer] recon-all terminates with error > > > > *External Email - Use Caution* > > Dear FreeSurfer experts, > > I am a first time FreeSurfer user trying to run a recon-all for a sT1_W > image. How

Re: [Freesurfer] recon-all terminates with error

2023-01-09 Thread Huang, Yujing
-boun...@nmr.mgh.harvard.edu On Behalf Of MANSON ERIC NAAB Sent: Friday, January 6, 2023 12:37 PM To: Freesurfer support list Subject: Re: [Freesurfer] recon-all terminates with error External Email - Use Caution Thank you for your quick response. Please, can you kindly assist me with