Re: [Freesurfer] recon-all with FLAIR error no FSL installed

2013-05-24 Thread Bruce Fischl
Hi Veronica BBR can use FSL or SPM to initialize, although we'll probably add an option in the future to use some things that Martin Reuter and Christian Wachinger are working on. How did the refinement work? We've only run it on a handful of cases, so it's pretty bleeding edge and I'm interes

Re: [Freesurfer] recon-all with FLAIR error no FSL installed

2013-05-27 Thread Popescu, Veronica
ischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: vrijdag 24 mei 2013 15:59 To: Popescu, Veronica Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] recon-all with FLAIR error no FSL installed Hi Veronica BBR can use FSL or SPM to initialize, although we'll probably a

Re: [Freesurfer] recon-all with FLAIR error no FSL installed

2013-05-27 Thread Bruce Fischl
Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] recon-all with FLAIR error no FSL installed Hi Veronica BBR can use FSL or SPM to initialize, although we'll probably add an option in the future to use some things that Martin Reuter and Christian Wachinger are working o

Re: [Freesurfer] recon-all with FLAIR error no FSL installed

2013-05-27 Thread Douglas Greve
Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: Re: [Freesurfer] recon-all with FLAIR error no FSL installed Hi Veronica BBR can use FSL or SPM to initialize, although we'll probably add an option in the future to use some things that Martin Reuter and Christian Wachinger are working o

Re: [Freesurfer] recon-all with FLAIR error no FSL installed

2013-05-27 Thread Popescu, Veronica
uce Fischl [mailto:fis...@nmr.mgh.harvard.edu] Sent: maandag 27 mei 2013 14:19 To: Popescu, Veronica Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: RE: [Freesurfer] recon-all with FLAIR error no FSL installed Hi Veronica thanks for the offer, but I don't need to see them. Glad it seems t

Re: [Freesurfer] recon-all with FLAIR error no FSL installed

2013-05-28 Thread Bruce Fischl
3 14:19 To: Popescu, Veronica Cc: 'freesurfer@nmr.mgh.harvard.edu' Subject: RE: [Freesurfer] recon-all with FLAIR error no FSL installed Hi Veronica thanks for the offer, but I don't need to see them. Glad it seems to be working. As for BBR, I'll leave that for Doug Bruc