Hello,
I am having a similar problem to that posted several times previously. I
get an error when running reg-feat2anat to register FSL feat files to
the freesurfer reconstruction, see:
https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2014-June/038437.html
because the
subjectsfeatfolder
there might have been a change in libraries, but it is impossible to
know without seeing your command line and terminal output
On 05/03/2012 07:36 AM, Auer, Tibor wrote:
>
> I have recently upgraded my Ubuntu system from 11.10 to 12.04.
>
> Before the upgrade I had no problem at all! After the up
I have recently upgraded my Ubuntu system from 11.10 to 12.04.
Before the upgrade I had no problem at all! After the upgrade the
"reg-feat2anat" stopped working: it gave an error when converting the
subject/mri/brainmask.mgz to
featdir.feat/reg/freesurfer/tmp/refvol.fslregister.nii.
However,
lto:[EMAIL PROTECTED]
Sent: Mon 04/06/2007 16:36
To: Furlong, Carolyn
Cc: Freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] reg -feat2anat error reg -feat2anat error
what platform are you running on?
Furlong, Carolyn wrote:
> Hi Doug
>
> This is what happened when I ran it with --debu
Freesurfer RedHat 9 version
on SUSE Linux 9.3
Cheers
Carolyn
-Original Message-
From: Doug Greve [mailto:[EMAIL PROTECTED]
Sent: Mon 04/06/2007 16:36
To: Furlong, Carolyn
Cc: Freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] reg -feat2anat error reg -feat2anat error
what
How did you check it? Can you check it with
reg-feat2anat --feat Akkaya_Zuhre_1_9++.feat/ --subject akkaya --manxfm
func2std
doug
uzay emir wrote:
Hi doug
the example_func to standard space registration is correct.
I do not know what to do.
Uzay
Doug Greve <[EMAIL PROTECTED]> wro
Hi doug
the example_func to standard space registration is correct.
I do not know what to do.
Uzay
Doug Greve <[EMAIL PROTECTED]> wrote:
It sounds like something has to be fixed. Is the example_func to standard
space registration correct? If not, then you will need to fix
iginal Message-
From: Doug Greve [mailto:[EMAIL PROTECTED]
Sent: Mon 04/06/2007 15:07
To: Furlong, Carolyn
Cc: Freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] reg -feat2anat error reg -feat2anat error
wow, not sure what's going on there. Can you add --debug to the cmd
line, caputre the t
04/06/2007 15:07
To: Furlong, Carolyn
Cc: Freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] reg -feat2anat error reg -feat2anat error
wow, not sure what's going on there. Can you add --debug to the cmd
line, caputre the terminal output, and send it to me?
Furlong, Carolyn wrote
Doug Greve [mailto:[EMAIL PROTECTED]
Sent: Mon 21/05/2007 17:16
To: Furlong, Carolyn
Cc: Freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] reg -feat2anat error
Did you see my email from last week? It looks like the problem was fixed
with new versions of a few programs.
doug
Furlong, Car
known option: `-
Usage: tcsh [ -bcdefilmnqstvVxX ] [ argument ... ].
What should I do?
Best wishes
Carolyn
-Original Message-
From: Doug Greve [mailto:[EMAIL PROTECTED]
Sent: Mon 21/05/2007 17:16
To: Furlong, Carolyn
Cc: Freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] reg -feat
It sounds like something has to be fixed. Is the example_func to
standard space registration correct? If not, then you will need to fix
it. That registration is purely FSL.
doug
uzay emir wrote:
Hi,
Orientation problem is outlined below.
1-When the target in coronal view, movable(example_fun
Hi,
Orientation problem is outlined below.
1-When the target in coronal view, movable(example_func) is sagital.
2- When the target is in sagital view, movable is coronal.
3- axial view is teh same both movable and target but The problem in this
situation is that there is an angle between mova
Did you see my email from last week? It looks like the problem was fixed
with new versions of a few programs.
doug
Furlong, Carolyn wrote:
Hi Doug
Please find attached the logfile that you requested, sorry for the
delay, I am only able to work on this one day a week.
Best wishes
Carolyn
Hi Doug
Please find attached the logfile that you requested, sorry for the delay, I am
only able to work on this one day a week.
Best wishes
Carolyn
Actually, I wanted the log file found in
featdir/reg/freesurfer/reg-feat2anat.log.
doug
Furlong, Carolyn wrote:
> Hi
>
>
> niiRead()
What do you mean there was an orientation problem? If you use analyze
files, then it relies on the FSL reg to std space being correct. Is it?
uzay emir wrote:
Thank you,it is working now. However, I have anorientation problem
with automatic registration results. This problem has been mentioned
Thank you,it is working now. However, I have anorientation problem with
automatic registration results. This problem has been mentioned before but i
could not find any reply. I think this is something related following lines
where I found it in the reg- feat2anat log file.
Regards
Uzay
I think this may have been a problem with our nifti reader that I fixed
a few months ago. I see from the log file that you are using a
freesurfer version that is about a year old. So, can you try using the
versions of reg-feat2anat, mri_convert, and tkregister2 that I put in
tp://surfer.nmr.mgh
Hi,
Actually I have the same problem. Here is my log file,
Regards
Uzay
Doug Greve <[EMAIL PROTECTED]> wrote:
Actually, I wanted the log file found in
featdir/reg/freesurfer/reg-feat2anat.log.
doug
Furlong, Carolyn wrote: Hi
niiRead(): unsupported
Actually, I wanted the log file found in
featdir/reg/freesurfer/reg-feat2anat.log.
doug
Furlong, Carolyn wrote:
Hi
niiRead(): unsupported timing pattern in
Pre_DB/DB_Prelip_BET.feat/example_func.nii.gz
sorry for the delay,
Best wishes
Carolyn
can you send the log file?
Furlong
Hi
niiRead(): unsupported timing pattern in
Pre_DB/DB_Prelip_BET.feat/example_func.nii.gz
sorry for the delay,
Best wishes
Carolyn
can you send the log file?
Furlong, Carolyn wrote:
Hi,
When I try to register my functional data to anatomical data using
can you send the log file?
Furlong, Carolyn wrote:
Hi,
When I try to register my functional data to anatomical data using
reg-feat2anat --feat feat_directory --subject subject_name
I get the following error message
ERROR: could not read ///example_func.nii.gz as 24
What does this mean? And
Hi,
When I try to register my functional data to anatomical data using
reg-feat2anat --feat feat_directory --subject subject_name
I get the following error message
ERROR: could not read ///example_func.nii.gz as 24
What does this mean? And how can I fix this?
Best wishes
Carolyn
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