Hi,
recon-all was successful.
But when I try
reg-feat2anat --feat '/home//func/2_reg' --subject xyz
I get an error with
MRISread(/home/sudhin/Data/freesurfer_subjects//xyz/surf/lh.white): could not
open file
Loading mov
Projecting LH Surfs
Loading lh.white surf
No such file or directory
Th
Hi Freesurfers,
I've run reg-feat2anat on several subjects in order to generate binary masks
to use in an FSL ppi.
For 3 subjects, this completely failed.
When I looked at the fsl's own registration of fsl feat 2 standard (via
tkregister2), the registration is fine, but after running reg-feat2anat
Does that file exist? Do you have permissions?
doug
On 6/12/13 12:59 PM, Sudhin A. Shah wrote:
Hi,
recon-all was successful.
But when I try
reg-feat2anat --feat '/home//func/2_reg' --subject xyz
I get an error with
MRISread(/home/sudhin/Data/freesurfer_subjects//xyz/surf/lh.white):
c
How are you generating the masks?
doug
Michelle Umali wrote:
> Hi Freesurfers,
> I've run reg-feat2anat on several subjects in order to generate binary
> masks to use in an FSL ppi.
> For 3 subjects, this completely failed.
>
> When I looked at the fsl's own registration of fsl feat 2 standard
>
Hi Doug,
I am using reg-feat2anat on the feat directory of each run.
reg-feat2anat --feat feadir.feat --subject XX
Then I checked and adjusted the registration with:
reg-feat2anat --feat featdir.feat --manual
Next I checked and adjusted the registration to the standard with:
reg-fea
The registration that should be used for all of these is
anat2exf.register.dat found in feat/reg/freesurfer. Can you verify that
that was the one that you manually changed? Look at the time stamp as
compared to the other files in that folder.
doug
Michelle Umali wrote:
> Hi Doug,
> I am using r
This file is created when you run reg-feat2anat and should be the one
that gets changed with --manxfm func2anat. You can handle this
differently if you
1. Manually edit the anat2exf.register.dat so that it is relatively
close (no need to be perfect)
cd feat/reg/freesurfer
tkregister2 --mov ../.
