Re: [Freesurfer] reposition surface for pial surface

2017-01-11 Thread miracle ozzoude
Hello Antonin, Apologies, I forgot to send them. This is the email and the vertex coordinates. For vertex, it shows N/A hence, not sure what value i need to enter in the vertex section of edit coordinates in the reposition surface tool. Thank you Best, Paul On Tue, Jan 10, 2017 at 4:54 PM, Antonin

Re: [Freesurfer] reposition surface for pial surface

2017-01-10 Thread Antonin Skoch
Dear Paul, I cannot see your attachment since I am only getting mail digest (without attachments) and the mail archive does not store attachments. I do not know for which option of surface reposition your question refers to. But, I hope when you play with the tool, you will figure out, as I did

Re: [Freesurfer] reposition surface for pial surface

2017-01-10 Thread miracle ozzoude
Thank you very much Antonin. I do appreciate it. Do I need to insert a vertex number or just the coordinates? Because when i clicked on the surface outside the pial (see screenshot) the vertex = N/A ( see screenshot). ALso, what step of recon-all should i start? (autorecon-2 or autorecon3)? Best, P

[Freesurfer] reposition surface for pial surface

2017-01-10 Thread Antonin Skoch
Dear Paul, I could chime in with my current limited experiences with this tool (using V6beta version of freeview). Maybe they could be helpful for you. Most straigthforward is using "edit coordinate": Select the surface you want to edit. Select tools-reposition surface - edit coordinate. With s

Re: [Freesurfer] reposition surface for pial surface

2017-01-10 Thread miracle ozzoude
Thanks bruce for your response. Since there is no documentation, how can i use it because I seen trends on the forum where it was suggested to use reposition surface ( e.g. https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2012-October/026117.html). Use = directions and parameters to input. Tha

Re: [Freesurfer] reposition surface for pial surface

2017-01-10 Thread Bruce Fischl
Hi Paul sorry, this is something that Ruopeng put together for me to mess around with - there isn't any documentation cheers Bruce On Tue, 10 Jan 2017, miracle ozzoude wrote: Hello Freesurfer, I would like to learn how to use the reposition surface tool in freeview. Specifically, what para

[Freesurfer] reposition surface for pial surface

2017-01-10 Thread miracle ozzoude
Hello Freesurfer, I would like to learn how to use the reposition surface tool in freeview. Specifically, what parameters to enter in the gui (see screenshots). Is there any documentation on how to use it if not, can someone with experience work me through it. Thank you. best, Paul