Re: [Freesurfer] rerun auto-recon on error output

2009-07-27 Thread Nick Schmansky
'bugr' is the command to type to gather most of the info we need to debug a problem. the 'recon-all.log' file is the biggest help. if you want to just try rerunning, then try: recon-all -s -make all Nick On Mon, 2009-07-27 at 04:12 +0200, Michael Scheel wrote: > Hi freesurfer-experts, > >

[Freesurfer] rerun auto-recon on error output

2009-07-26 Thread Michael Scheel
Hi freesurfer-experts, I was running the recon-all script and did get some errors due to a missing vtk and x-windows libraries. The output that was created seems fine though, just some files are missing. I was wondering if there is way to rerun the analysis, but only the parts that exited wi