Hi Martin,
thank you so much for the quick and helpful reply!
As I only edited the wm.mgz in the base, there was still some non-wm
included there in the long and also some minor edits to the brainmask.mgz
were necessary that I had probably overlooked in the cross.
To run this command
recon-all
Hi Anna,
yes, long can still be edited, but usually this is not necessary. What kind of
edits did you need to do in the long?
You would need to call with the long flag, and passing the cross and base name.
So just like the regular processing of the -long step, only replace -all with
Dear FreeSurfer team,
using the longitudinal stream in v6.0.0, I edited the cross and base runs,
but still had to edit the long runs for some subjects. If I understood the
LongitudinalEdits Wiki correctly, the long can still be edited if
necessary.
Rerunning the respective recon-all command with
