Re: [Freesurfer] resetting wm-mean [CA Normalize]

2014-04-21 Thread Bruce Fischl
Hi Mark have you looked at the atlas? You can view it directly with freeview to see what the actual means are. What command line did you use to build it? Bruce On Mon, 21 Apr 2014, Mark Plantz wrote: Hi freesurfers,   I am running into an error where the white matter and gray matter means of

[Freesurfer] resetting wm-mean [CA Normalize]

2014-04-21 Thread Mark Plantz
Hi freesurfers, I am running into an error where the white matter and gray matter means of my atlas are automatically setting to 0 during the #@# CA Normalize pathway. I copied a code segment below to help explain better. Has anyone else run into this problem? Is there a way to manually change t