Re: [Freesurfer] retinotopic mapping selxavg3-sess error

2013-07-05 Thread Bianca van Kemenade
Hi, I just wanted to let you know that I solved the problem by creating a new virtual machine on which I installed the newest version of Ubuntu (13.04), FSL, and Freesurfer manually. I guess there could have been a solution with the virtual machine running Xubuntu via the Freesurfer virtual disk

Re: [Freesurfer] retinotopic mapping selxavg3-sess error

2013-06-24 Thread Bianca van Kemenade
Sorry for the delay. I'm new to FSL, Freesurfer, and VB, so maybe I'm doing it wrong, but I have the impression I cannot run FSL from the VB: - Typing 'fsl' yields 'fsl: Command not found'. - Checking the environment with 'echo $FSLDIR' yields 'FSLDIR: undefined variable' - Checking the path with

[Freesurfer] retinotopic mapping selxavg3-sess error

2013-06-21 Thread Bianca van Kemenade
Dear Freesurfers, I'm setting up freesurfer to do retinotopic mapping. I use a PC with Windows XP, so I installed Freesurfer using the VirtualBox (with Xubuntu). I managed to get through the initial steps for retinotopic mapping, but I get stuck at the actual analysis. The point where I get

Re: [Freesurfer] retinotopic mapping selxavg3-sess error

2013-06-21 Thread Douglas Greve
Can you run FSL at all in your VB? On 6/21/13 7:49 AM, Bianca van Kemenade wrote: Dear Freesurfers, I'm setting up freesurfer to do retinotopic mapping. I use a PC with Windows XP, so I installed Freesurfer using the VirtualBox (with Xubuntu). I managed to get through the initial steps