[Freesurfer] running freesurfer after talairach touch-ups...

2009-07-16 Thread Ritobrato Datta
Hello all, I ran recon-all -autorecon-all -s After it ran all the way through, I ran tkregister2 --mgz --s --fstal --surf orig and saved everything with the SAVE REG button in the tkregister2 toolbar. Since I initially ran all the steps before the talairach touch-ups, what do I run to re

Re: [Freesurfer] running freesurfer after talairach touch-ups...

2009-07-16 Thread Sita Kakunoori
After fixing the Talairach registration, you need to rerun the whole recon-all process. The old files will be overwritten. recon-all -all -s And after adding control points, you need to run, recon-all -autorecon2-cp -autorecon3 -s Sita. On Thu, 16 Jul 2009, Ritobrato Datta wrote: Hel