Re: [Freesurfer] same aparc ROI with mri_label2vol?

2019-04-17 Thread Greve, Douglas N.,Ph.D.
Use mri_label2vol with --fill-ribbon. Note that you can use this to convert the aparc.a2009s into the volume space, then use something like mri_binarize to extract the labels you want. On 4/16/19 7:52 PM, Sam W. wrote: > > External Email - Use Caution > > Hi, > I created a series of labe

[Freesurfer] same aparc ROI with mri_label2vol?

2019-04-16 Thread Sam W.
External Email - Use Caution Hi, I created a series of labels with mri_annotation2label (aparc.a2009s labels) and then created a reg file with: tkregister2 --mov mri/rawavg.mgz --noedit --s bert --regheader --reg register.dat and the volume: mri_label2vol --label labels/lh.G_cingul