I think the best way to diagnose the issue would be to run the subject
using the standard atlas provided with freesurfer. If that runs to
completion that the .gca is almost certainly the source of the problem.
-Zeke
On 08/19/2013 03:07 PM, Mark Plantz wrote:
Hello all,
While running
Thanks for the responses.
I think I have determined the cause of the error. I thought it would be OK
to run recon-all with a .gca atlas that contained some different ROI's from
the default .gca atlas. I think that this may be throwing off the
subcortical segmentation.
Does anyone know if the gca
Mark,
How was the .gca file created? Can you send us this file?
Nick
On Tue, 2013-08-20 at 14:15 -0500, Mark Plantz wrote:
Thanks for the responses.
I think I have determined the cause of the error. I thought it would
be OK to run recon-all with a .gca atlas that contained some
Hello all,
While running recon-all for a subject, I ran into the following error
message:
*reading aseg from
/Users/IngvalsonLab/Desktop/avgseg_seg_test/mri/aseg.auto_noCCseg.mgz*
*reading norm from /Users/IngvalsonLab/Desktop/avgseg_seg_test/mri/norm.mgz*
*0 voxels in left wm, 0 in right
