Hello,
I am running the reconall steps individually for a firts try.
I noticed that I get a segmentation fault when I run mris_anatomical_stats
as whown below:
[jdr...@trumpet mri]$ mris_anatomical_stats -mgz -f ../stats/lh.aparc.stats
-b -a ../label/lh.aparc.annot -cf ../label/aparc.annot.ctab convertedfile
lh
INFO: assuming MGZ format for
volumes.
computing statistics for each annotation in ../label/lh.aparc.annot.
reading volume
/trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/mri/wm.mgz...
reading input surface
/trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/surf/lh.white...
reading input pial surface
/trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/surf/lh.pial...
reading input white surface
/trumpet/downloads/FreeSurfer/freesurfer/subjects/buckner_data/tutorial_subjs/convertedfile/surf/lh.white...
reading colortable from annotation file...
colortable with 35 entries read (originally
/space/amaebi/26/users/buckner_cortical_atlas/scripts/colortable_final.txt)
Saving annotation colortable ../label/aparc.annot.ctab
table columns are:
number of vertices
total surface area (mm^2)
total gray matter volume (mm^3)
average cortical thickness +- standard deviation (mm)
integrated rectified mean curvature
integrated rectified Gaussian curvature
folding index
intrinsic curvature index
structure name
Segmentation fault
john
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